NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134088_10000520

Scaffold Ga0134088_10000520


Overview

Basic Information
Taxon OID3300010304 Open in IMG/M
Scaffold IDGa0134088_10000520 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13438
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005875Metagenome / Metatranscriptome387Y
F047605Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0134088_100005201F005875N/AMIIGLIGGSLFLLAGFLSLLPWAVSGSIAGVLLGSWFGGEIKKRLDRVNEEGKETRVIRFRKRALLEDNVSKMRTAGWEPRWESYRETQTGLLVRRIIYSVVMERKQRKLERRALKQLSKFLFLFPGNVTSS*
Ga0134088_1000052012F047605GAGGMVEACDCTIVIDNGVNRDYLSTSKRTTDETASIAVRSLTELLSGAEDVEARDILQVLSRGDLATVCSFSLRTGDTLQASVIEALRTPSANLPLNKAKGALLLYRGPATLSTAQFAQAYDTLVSIVGSNLSFVHGSVYSPSEPSVCLFLTGYAYGTALNGFIDFIELYDAEYGQEDGEDFTTLSVPLYQMEQVQARRD*
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