Scaffold Ga0102883

Basic Information
Taxon OID	3300010312 Open in IMG/M
Scaffold ID	Ga0102883_1014253 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1549B-02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010312 Open in IMG/M

Scaffold ID

Ga0102883_1014253 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - metaG 1549B-02

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2426
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2426

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2322	Long. (^o)	-123.8817	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2322

Long. (^o)

-123.8817

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009960	Metagenome	310	Y
F021979	Metagenome	216	Y
F050949	Metagenome	144	N
F054034	Metagenome	140	N
F084236	Metagenome / Metatranscriptome	112	Y
F092047	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102883_10142531	F021979	AGG	MLTIENINIINSKFAGTTEWRIGEMFIGEQNYVFVIHKRVGEWIIGDVTHSELTVRLYRVKTIDGYVMETGIVKQNHYSRSAHTIDSMRTIYGFTMCLDGHIKNTIR*
Ga0102883_10142532	F054034	GGA	MLTIRTFKKLEGLVLMDGLNVESIFEFNERYSIWLSDGTNIEIDRDRHWKGGNYTYYKMYIAGGTTAMTEFIMIGTINTLDRMKKHLIYIHEKYKTK*
Ga0102883_10142533	F084236	AGG	MLTIKNQYKLVAETIVVSKNGINEHWIVDDVAETPDTYVMVVLRKMGIFDTLVRRIKIQREKNELGMYSVQIIQNGKIIDKDQIRLRNIQTAEGMLNELKTIMEFI*
Ga0102883_10142535	F009960	N/A	MLTLKNINKINGYALEVKGNGYDFKGWDNTTNDVAYFTLAGVSASNPLIRITLHKKGRMVFDNIQKSKGCYVYGVAVDGLLFHYTKERLNTPAKFRNEIETILNVIPC*
Ga0102883_10142536	F050949	GGA	MLKIENRGRLLSDSFYDKMGMYWVVDKIIDDTDEYLILIENRKGPKEIFALNKQNSYGIGYEFGISAGGPGMQRMYKVKTYIPIETISDKRLLIKRMTEMIDNSYDI*
Ga0102883_10142537	F092047	N/A	MLTLKNFTNIEGNEFQLSSGNKFLIGIAKDEGEHYTFGVFPLAVNGVAIIKDVIVYKLYKDILYGGDYYHGYWLESPKMKRIVKVKPENLTLKNFILELHIQTGMICSK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102883_1014253

Overview

Ecosystem & Geography

Associated Families

Sequences