Scaffold Ga0116211_1210266

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116211_1210266

Scaffold Ga0116211_1210266

Overview

Basic Information
Taxon OID	3300010313 Open in IMG/M
Scaffold ID	Ga0116211_1210266 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Sagole hot spring metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	504
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	South Africa: Limpopo
Coordinates	Lat. (^o)	-22.5304	Long. (^o)	30.6814	Alt. (m)		Depth (m)	1.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012911	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116211_12102661	F012911	AGGGGG	MAEQHDSKFDEFLAIRKPGAHLEAEVVPDDFVMQLGVDLTNYHKFPRVDDNVTYPKANLDIRQELDRDSGAELPDYSGPYKADLRFTDFSKQALASKFLPWSEAYMQLCVDGWAREVAKRYGTETMAEIEWAAWVAQVVPEIERMKQEFLPAG

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