NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136655_1125860

Scaffold Ga0136655_1125860


Overview

Basic Information
Taxon OID3300010316 Open in IMG/M
Scaffold IDGa0136655_1125860 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)768
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.0754Long. (o)-76.1533Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006216Metagenome378N
F030425Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0136655_11258601F030425AGGAGMATTTNFGWDTPDDTDLVKDGALAIRTLGSSIDTSFVD
Ga0136655_11258602F006216N/AALGYMYEDANGNINYADASHRQDYLIANGYTDLDASHAIASGIGIIQRQGDLSNKIIMDYGNNFNSSYTAEDLDSQAEYGLFAEQFNSYLKNAADVEDVADRLLQLRAYPRDTFQSITFALQSPEIDDTDRDALLNIFMGQPVRITNLPLNILGGEFTGFVEGWSFSASVSGLSITFLATPTEFSAIAQQWAQVNAAESWNSVLNTLEWQDAIGVIS*
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