NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134109_10007454

Scaffold Ga0134109_10007454


Overview

Basic Information
Taxon OID3300010320 Open in IMG/M
Scaffold IDGa0134109_10007454 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3021
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000921Metagenome / Metatranscriptome833Y
F088654Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0134109_100074545F088654AGGCGGMSSPNRTRALAFFLGLLLVGAPIDIGRAQSTWDRYKPGTIRGVIQQNDSSIRANSPGKLPSWVVTGNQFPTLARVVYRGDSRPVDSIRAEIVRRWAVSFLRDSFMARRFRREYLFQEGQTLLWLPVQDTVASYFPRELQTGQEIALYVLWLGAYYAGDDITWAFVVTEFDAGSAKR*
Ga0134109_100074547F000921N/AMTLGGVLGLPPNKRLKLAGGDRSRGSGVLCPWRGTDFVRHPCAGERVARSLGAIR*
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Institute for Fundamental Biomedical Research
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