NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134067_10004252

Scaffold Ga0134067_10004252


Overview

Basic Information
Taxon OID3300010321 Open in IMG/M
Scaffold IDGa0134067_10004252 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3738
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077145Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0134067_100042524F077145GGAMAVDTQGKSGWTGKDVSEREINLLNQRVIQFTDIEDTFLDVWLQLENANMDELAAKIINAGLLFEHYLSQLPNDPTQRSPEEIAQLETYRSDAGSALDEGRAALASTMTTAGLGSNMTSSLASTAIKTGTLTFWSYLAFQEYLAVAAGNILSVVGFGVAAVAELFLGFWLAGYKGATKSIYRPKQD*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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