NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0134084_10009398

Scaffold Ga0134084_10009398


Overview

Basic Information
Taxon OID3300010322 Open in IMG/M
Scaffold IDGa0134084_10009398 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2432
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050613Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0134084_100093981F050613AGCAGGVKIAQSQPKVLMLGANALVRDNVRVLLGSMGYQYLVAPTLKETLTLLEQGRPDAAILDPQQADSPPAQVVAAFHKMVPHLRGRTIVLLGEESDPDLLQLLDAYFLPRVPQDALLQELWPSLDSLLRRMSTTQQVTRNAPLVFDSFLQPSLAGARSSHPAVRRLLYESDRLVADLSVEGHKDSQRVTLVGQVLDTAKREPHLSSVPIVIQGHEGLMGMAKTNEWGEFRFEFNFEPGVSLEIGARQNYWVSVGLPDSKSVTGGTTEESKAPADSEAQKDVHPKGKKRGRRDGKL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.