NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134084_10066261

Scaffold Ga0134084_10066261


Overview

Basic Information
Taxon OID3300010322 Open in IMG/M
Scaffold IDGa0134084_10066261 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1095
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004140Metagenome451Y
F006513Metagenome371Y
F023562Metagenome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0134084_100662611F004140N/AMPKLVSERIKKLREEIAEISEVNRTQMHRRDGGAAADQERRLQRLQEILDELMALTDWKKP*
Ga0134084_100662612F006513GGAMARVLTWVSDEYFTGWACSACDWTFPLPSLLSDPEAKKAYDRLASAKFQRHDCATHQPVASLNPESFIARAKGLVMRGFKPTDAAEITAKEIMFENHDDPDIARKVQIEVNDFLRRVKEGLI*
Ga0134084_100662613F023562N/AMWQELYNAAILEFDLTRLPERVEAACHAIHQYRVQKRQSLSAAESSELDEALRVLFKLMQRAA*
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