NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134086_10006491

Scaffold Ga0134086_10006491


Overview

Basic Information
Taxon OID3300010323 Open in IMG/M
Scaffold IDGa0134086_10006491 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3492
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003430Metagenome487Y

Sequences

Protein IDFamilyRBSSequence
Ga0134086_100064912F003430GAGMNRLPSARTVVRLITPFLIAACQPQARRLLLLDLALSDPVVLNGTARPWADAGYKVQYRRFYPHLTRADLPQFRTLVFLLGREPEAASDALTAGDVALLDEWVRRGGVVVLGYDGDGEGYLDRWTANRWLAYEGAGISIGDRVLEDTTLRVVTTGRMQPWVVAQPVGDEPLGSAYDPFPLDRNHAVVTREPTQLLALTSHSAFVRASRSLAPRSDAGVAAAARIGEGLVVVMSRHALGTLGPQYRPSTTPFLATGPLADTYAFLRAVARWTRRPAEWAHVPPATHRASLALQDAPLPVELQAPRLAPPDGVETIDLPLVADKKYARPANVPDWLRQQGLRVLWTPLLATRDEQRVPRPHATLDSLVTFLDVGGFNLLSGDAYPEGADSMHARWWERDAVRRAWSDAVSRLGPTSVAWIPAFDYGGARLPPADSSRGPRGEALPVPCVLDTALWVAGFAPAAAALGRLAADQRTLVIALGFDLGGPLRDPPPPAPSRLRGRSYGMGQEFCDAAWRRSLTQLGRRGAALDSLPYAARYGTLREAGLLPLYYRALQDEVAERAGTLRDRILRQRRDVYFAFRLPQSPADWFSLGLLKGFALPDRPLLLFTPEAQTRDVLGLLRARGLNGVHAVELAPALLRTRDWAGLKRMVFEENDGFWLSGEAAGGKTAGRLPPDSLVRLLRRLAR*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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