NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134064_10001773

Scaffold Ga0134064_10001773


Overview

Basic Information
Taxon OID3300010325 Open in IMG/M
Scaffold IDGa0134064_10001773 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4882
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043326Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0134064_100017731F043326N/AMLAAAATLVLIWTATADTPLPERINESIRLGSTLLLLAVAFLVAWRADDQPPNVSMALALAFIFSNDAFLMLLEKLRVNAAIRAPVAVLTFILGAGFYIRAAQLFPRTLTPADITSSPTIWGRIKPLRVVLIFFLRARAVWILVGVATLLFFGNPHFAEAIRLIIVLMGVVYFYVMYRSGDVETRQKVLWFFEAALVTLVISLVADGINAVLHGTGSPTLRVVLSVFMNAANSLALVICISAAVFYAGAISPALVIRKTFIYGTTAALLLFTYATVEAFLVNLLVDGAGISDRFASALLGTVFGLAFHPIKNRMEHALQRIGPLARRDA*
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