NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134064_10016979

Scaffold Ga0134064_10016979


Overview

Basic Information
Taxon OID3300010325 Open in IMG/M
Scaffold IDGa0134064_10016979 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2024
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002657Metagenome / Metatranscriptome539Y
F026992Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0134064_100169791F026992AGGAMRHLVRFFSCLLMVFCVSLPASPFDTPLSDEAVREAYFVGQRHDASFLTNYIKFLPRPKTGPHISSVTFLTPFAQLAQISSNYVGNYSAQQALLDHRGQQEVVKITVEIYLTNSYGAMIPNPQSPRSPSSPPLIPRHYDFWRDFHVQVSDAHQVLSPSDIGGRPLYRCGRYGPCRPRGAAIDLEFPVGAFASDSVTVKVIPPEGDSVSVDFDLTRFR*
Ga0134064_100169792F002657GGAMRPGSARPVTSFLAVALLFSPSFFAFDTPLSDQAVREAYFLGQRRDETMATFLNKYTKFFPPPKTGPDIASVTFFTPFALLVQQSSQHTSGYSAQQAALDHRDQGEFVRISVQIHLTDSYGPFIARPTGSRSGSPTGFVPRPYDFWKDFDVQVSSEDHQLKPFSSSGQPDLLCDEGGCTLIGATLQFDFAAEDFASGSAVIDVIPPEGDPLSVDFDLDHLR*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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