NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134065_10001672

Scaffold Ga0134065_10001672


Overview

Basic Information
Taxon OID3300010326 Open in IMG/M
Scaffold IDGa0134065_10001672 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5277
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007303Metagenome / Metatranscriptome353Y
F008873Metagenome / Metatranscriptome326Y
F081123Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0134065_100016721F008873N/AMTERKKEDEKKPAKLPPFVEPQLFVAVEEANRRLKEIMKVTNPTERLYKSIQRITEVNEMMLRRQDQLTKLYEPSENVRRYLERIRQLVEQITRTKMNELPLISRTVIPQLEGEVSGYVETFE
Ga0134065_100016724F007303GAGMSSAMGTKEFLDFQQTIRDLERQVDILLREAATNGPSQRTRELTEKVYILAERANQIRLQDARSQSTTNQSILEKLPKQFDQDFGKFKGLITFVEYVRKQHYNATGHNLGRTYGSFGSKEISPGHHHGKLIIDTLEIRCDACGNESPQSERRDYPIHVLLYDRGQWEVCTGQSDCECQGYEGKGVRVGVNLSPERVRKGRA*
Ga0134065_100016725F081123N/AMIDSEKLLKDLNLRLAHFGDSDVASARSLLPYSGPSSDARQFYLEIASKLVFKIE*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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