NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129298_10050322

Scaffold Ga0129298_10050322


Overview

Basic Information
Taxon OID3300010328 Open in IMG/M
Scaffold IDGa0129298_10050322 Open in IMG/M
Source Dataset NameLake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I19B2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1985
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameIndonesia: Gulf of Boni
CoordinatesLat. (o)-2.75Long. (o)121.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038042Metagenome166Y
F065350Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0129298_100503223F065350N/AVKLAEEVLQKQSSFEQFCSQFDWYDFKILSSFLTKLDYPLDTTTQSLHSIWQLFMRTGIKISKMTISRRLRTLTILGLLRKLTKTNPAFYEIAKGQEELVRKTVYFKHTEELMEF*
Ga0129298_100503224F038042N/AMKTGPKPIGSLLIPKILQVLQEAGCDLRTWTITIRLRQLLNRPRLRWETVYKYLEQMVQEQIIFKYEDTSGIATYSKNPIVREKVLF*
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