Scaffold Ga0136651

Basic Information
Taxon OID	3300010330 Open in IMG/M
Scaffold ID	Ga0136651_10000464 Open in IMG/M
Source Dataset Name	Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22269
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (81.82%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

22269

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (81.82%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin, Gulf of California
Coordinates	Lat. (^o)	27.0078	Long. (^o)	-111.4071	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin, Gulf of California

Coordinates

Lat. (^o)

27.0078

Long. (^o)

-111.4071

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F019935	Metagenome	226	Y
F023017	Metagenome	211	Y
F040421	Metagenome	161	Y
F042112	Metagenome	158	N
F055335	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136651_1000046412	F019588	GGAGG	MGEEERIEEEVKRVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGIPVRDLLK*
Ga0136651_1000046413	F040421	GAGG	MREEGVRAIMMLTLAFVVGFKSIILFLQHSFRGAFTLFLLAWTCICLAFPDNLIGASIGQDLKLGEVIEKWAKKRELRRK*
Ga0136651_1000046417	F017081	AGG	MERKEVRWWKGICILGMFAFLIASTQAIDITEITVTETQIKITITNATSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKPNSTYYVKVCDSESCSNVVSVNVSKEEKLVEQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLTYWIRQEDVMLPSIVGLITGSVLIVMLPPSAQHIAYILLVVSIAGTLYTIIKARR*
Ga0136651_1000046419	F055335	AGGAGG	MRAYDILLFLVCLEATIGFVSSLHVFPVDYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALTMFLNMLVAIVAIYIPLTTVLGVPLEIALLLQGVVYVVYAWAIIQFLSGRSVKYME*
Ga0136651_1000046426	F042112	AGGA	MNFNDYSPTPLPSEEEKYISKLAYPHLLFIQIQRIMDAINVGDDGKEELENLKALLKPSWREEIDAKMEKHEKEMEREISKIAKVKERVGITTYKEMKRRAIVKYVRRYVQYVIEKLDEVGLLLVEERTVLRGGGIIT*
Ga0136651_100004643	F019935	N/A	MPKVKETPNRVIVHIGDLWKKYHRASPKVRKRWKFRIKDVGRTKHSELILCNPPNKDWQVYGWSFSKSQVRKGKRKLIVSDVKAIEILQKLKENGELRGWKLVFRS*
Ga0136651_1000046431	F023017	AGGAG	MKQKIVEFLKNVNGHIATIPILAKVIKASPPTAKSIVGELEVEKKVRIVRLGNDYIVKLEKGGE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136651_10000464

Overview

Ecosystem & Geography

Associated Families

Sequences