NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136651_10001459

Scaffold Ga0136651_10001459


Overview

Basic Information
Taxon OID3300010330 Open in IMG/M
Scaffold IDGa0136651_10001459 Open in IMG/M
Source Dataset NameMarine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13018
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007460Metagenome350N
F015290Metagenome255N
F055335Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0136651_100014594F015290N/AMNNKGQAGEIAVFAVLVVMLAFAYIFLSPVVQDIKNAIPLISDTTSWTPSQMQVMNWLFNAWYAFPFFGFLALLVWLIKRAIEKRSGEVT*
Ga0136651_100014595F007460AGGAGMIDDEGEGIGAAVFAVMISLVIAIINFFLLGSIMCGILPPLTNIGIDETSPFAQALSVVPNLVNVFFQLPLILIILLFVWLFKYIVKKHKYTYQEEGGEEEW*
Ga0136651_100014597F055335AGGAGGMRAYDILLFLVCLEASIGFVAAIDVFSTTYVDPSAVDTQWDLHTIENETQNQSIFDQIMLATDLLFRAVTMFFTMIVAIVAIYFPLTNTLGVPGEIALLLQGVVYLVYMWALIQFLSGRSVKYME*
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