NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0136651_10012669

Scaffold Ga0136651_10012669


Overview

Basic Information
Taxon OID3300010330 Open in IMG/M
Scaffold IDGa0136651_10012669 Open in IMG/M
Source Dataset NameMarine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4628
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050821Metagenome144N
F057027Metagenome136N
F098395Metagenome103Y
F100149Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0136651_1001266910F057027AGGAGGMARKWDRGVFEEARREVEERAKKIGFIFPPKNRGEEIHIEILDDTFTQVYEGETGLDDRTVDWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGDPLNMQGSVFTITGMGNYNYEVVYRKPAKEPQIVDERKIEDVVKKVISSGNIPKENISLWVKEYLKVEGLEVPAAVIESVVNRVVG*
Ga0136651_1001266911F050821N/AMSFKKKENTKFGRFNMIVKDMYCDYCKQETLHECQSNELWRCVQCQNTRFEIINIPQNEIDWEKPVRYLWRSGDFAYVTSALAPDILRLDEMKELLEGKRIRIPLFKIKDKFLPKYY*
Ga0136651_100126692F100149N/AMYWSKEEEEILKSLWKKPDITAKTIKERHLPHRTINAIQKKASSLGLTKEKIKIDYEKVNEIII*
Ga0136651_100126695F098395N/AMKIEVITPLDLEDFVKRIESLEEDSKLHDSLLHDAFENIDQMKKRLNELEKRVKCLESNEEAYSKE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.