NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136651_10104322

Scaffold Ga0136651_10104322


Overview

Basic Information
Taxon OID3300010330 Open in IMG/M
Scaffold IDGa0136651_10104322 Open in IMG/M
Source Dataset NameMarine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1492
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036512Metagenome169N
F040420Metagenome161Y
F102256Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0136651_101043222F040420GGAMVYGIMKIFILLVMGILLSLSLSQFLVVDSTDSHPYINGTYVCRDYGRDLILSAAKYHIYLDYIYVPEKNHMMVGLYNPLGHSIEIIEPQTDEIVEYVKENNKHYIRIPVWNECLYYSNIEIA*
Ga0136651_101043223F036512GAGMGGIIKMYWKVPDYLKKYVRIQDMLRNIFKPCDCGEELKKCEKEKQYCAKRIESLSRTLTHSIILPEVTEHRKCVKEIKPWKIAKKMGNFDLVTADETYYALPLNSWIDVLNSIQPQVEKVLKKWRRDISDCDDFALVTASAVVASFAYDPFEKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG*
Ga0136651_101043224F102256AGGALEFYYENYITHCPFCGNKVKYVGRIQENEIEGPIYTLKYSTGEKMRKKIEEEEAIKEAEESWYLWEE*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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