NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136651_10120851

Scaffold Ga0136651_10120851


Overview

Basic Information
Taxon OID3300010330 Open in IMG/M
Scaffold IDGa0136651_10120851 Open in IMG/M
Source Dataset NameMarine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1370
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076704Metagenome117N
F084957Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0136651_101208511F076704N/AIRIGLESAPNESIWHDGRDPLLNSLTMDTSVDIDKIYVVGSRDAVSMIEGTQEVTGSLERNLYSKNATYNEFIYAGNNSFLDLLAATGMYGESLQSCKILMNTTSNSASADYNRVIYGVKFHSYRTSTAAGDMVTESVDYDATNISTH*
Ga0136651_101208514F084957AGGAGGMNIEDYKKKNTKRIKCPSGLEVTINNITPYTLLRIVDKLGINPTREEVYTKPVIDALFKAFLKEPVVGKDIEIEDFLREDYIFLHNLIFEKVTLPEE*
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