Scaffold Ga0116200

Basic Information
Taxon OID	3300010332 Open in IMG/M
Scaffold ID	Ga0116200_10000886 Open in IMG/M
Source Dataset Name	Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10963
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (77.27%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

10963

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (77.27%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin, Gulf of California
Coordinates	Lat. (^o)	27.0078	Long. (^o)	-111.4071	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin, Gulf of California

Coordinates

Lat. (^o)

27.0078

Long. (^o)

-111.4071

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F024453	Metagenome	205	Y
F040421	Metagenome	161	Y
F055335	Metagenome	138	N
F072934	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116200_100008861	F024453	N/A	AILQNLAQRPDLTDLERQALDFASSLLYQSIYSEEISEVGERVKSVREERREGDMDKVRSVHELAQVRKANAKQ*
Ga0116200_1000088610	F040421	GGTGG	MREERVRAITMLTLAFVIGFKSIILFLQHSFGFAFALFLLAWTCICLAFPDNLIGVSIGQDLKLGEVIEKWVRRRELKRK*
Ga0116200_1000088611	F019588	GGAGG	MGEEKRIEEEVKEVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKIGVPVKDLLK*
Ga0116200_1000088615	F072934	AGGGGG	MVEIDIEKLLADEEIREKMNEWVREKAKRRLESMKNLSEPHRRYLEKIASGEWEVW*
Ga0116200_100008862	F015290	GAGG	MLNNKGQAGEIAVFVILAFMIAFAYIFISPIVQNIKDVVPTIADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV*
Ga0116200_100008863	F007460	AGGTGG	MSDEGGIGIGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTSIVGVDETSPFAQALTVMPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGGEEWW*
Ga0116200_100008865	F055335	AGGAGG	MRAYDILLFLVCLEATIGFVSSLHVFPVSYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALTMFLNMLVAIVAIYIPLTSVLRVPSEIALLLQGVVYVVFAWAIIQFLSGRSVKYME*
Ga0116200_100008866	F017081	GGAG	MWKRKWWKGICIFIVLAFLITTAQAIDITHVTITSPTTIRIVIENANSSGYIFISPTNTSFPYAFSHQGNGTYTITTTFLKPAIWYFKACDNSGCSNVISVDVSAKEQLMEQNFTSQFNTLMQSGNFLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGLITGRVLIVMLSPSAQHIAYILLVISIAGTLYTIIKARR*
Ga0116200_100008869	F014691	AGGA	MERRGWWIVRGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYLALVVILAMAIGVFLSLVGAR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116200_10000886

Overview

Ecosystem & Geography

Associated Families

Sequences