NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116200_10000979

Scaffold Ga0116200_10000979


Overview

Basic Information
Taxon OID3300010332 Open in IMG/M
Scaffold IDGa0116200_10000979 Open in IMG/M
Source Dataset NameMarine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10624
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F011723Metagenome287Y
F016098Metagenome249Y
F024940Metagenome203Y
F024941Metagenome203N
F028993Metagenome189N
F091133Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0116200_1000097913F016098AGGCGGMSEERKFVYMRKTRSGNGVRMRDGEIVYIASIRSLEAFLQGEQEYVAFAKMPYRQIPNEKNERDLVYTWCDKCQGLRFFRKITEDKWRCEMCGTERTATELIEKVRSMLETD*
Ga0116200_1000097915F024940GAGMEREIIHKKIRSIKELREFITDYLIEHSEMRTKAMLSQNKFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVFEEKKEREEDENRDTF*
Ga0116200_1000097917F024941AGGAGGMAYYFWGRLGITKGEEYRKLLERAWNLGWSQRRFFREARTRGLGYAEALMREDWHRFGYVESARSYEGKLRVHIFFDEVVKKLREEEKWTWSEIREFLKERKQPSKWTPETKAKEIVFEKYARKAFPELYL*
Ga0116200_100009792F028993AGGTGGMADIVEKAVKKRKERIAVSEAYYKEGVEAPSKDWLTEFKKAKDRRNAGLRRAMEEGLFEVGAERVGTEGWKHATLAKADRWLTGASSEEASAKYESAMRDVAECIERARKAVEGMPTTTIEQRAEKSKRFQIEMSKCMEEKRKRR*
Ga0116200_100009794F011723AGGAGGMVIYNKGLRTDSSTDEGKEIFSLTSKEEEKYRVRRIVITDVYTNPLFMEIWVERDRIGENIPLEVASDIAPERVIDIDTEIPIGHTFSIKIKPQNSGSQGSVRGWVEYEIVG*
Ga0116200_100009795F009582AGGAGGMLARRGRREFIGGTERAVKEARVDVILQRVNEKIGREIDVSPSHIYRYGVNNIFQRTFAYLLGWKADGEPQKVAVTEGGLLKVGIAGAGFEEIDVLQGTATVEWSDVLEFSFVPNRIRFESLDYPYTAKFSKDNVTWSEAIYVDEGTPRDYDICAKYIKVKRYGGTDAKYWVIGMR*
Ga0116200_100009798F091133GAGMGIFDVWTSWTDWLSDWWNAFKDKVWDIKVELWSWVDDIAKYWVEQADMFFDILKHTWSEVEDLMEQAKSYADDIVTDAILKIDNWVTTFGETVAELWEKIEPYFEPIITPIEEALDTIQNVKIPSLEEITNWAKEQLDNILNTDLPFLNQSVNDLWNEANEIWNEIWNSIWTSLNNAWDDINNLWNTFAEIPADVWNAITEGWEGFTDFLFEQGEKFVEKVLDIDLPVDDIIEDLERKFKGGEK*
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