Scaffold Ga0116200

Basic Information
Taxon OID	3300010332 Open in IMG/M
Scaffold ID	Ga0116200_10001391 Open in IMG/M
Source Dataset Name	Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9445
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (84.21%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9445

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (84.21%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin, Gulf of California
Coordinates	Lat. (^o)	27.0078	Long. (^o)	-111.4071	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin, Gulf of California

Coordinates

Lat. (^o)

27.0078

Long. (^o)

-111.4071

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016235	Metagenome	248	Y
F024941	Metagenome	203	N
F040961	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116200_1000139116	F040961	GAG	MVNAVECLWSEEQARALITFLIAEKKRHERDIHNIERSIERIKREFGFTEADIAKCEELAWLYVNF*
Ga0116200_1000139117	F016235	AGGAGG	MEENKIPSSPPIFSHKRWHHRQGYQRCVEYVGIDKNDDYFGRGFPLCAVIEFKQSIYRYAPRTYEIAKLLASLRLLYGEEYMEELNALAEVEYLKLRREFDRYRQMLKEKLEEEERKKKGERRWLITFGRD*
Ga0116200_1000139118	F024941	GAG	MAYYFWERLGITKGEQYRQLLEKAFKLGWSQRKTFTEARRLGLGYAEALMREDWHRFSYVESARTYTGKLRVHDFFDGVVLKLREERGWSWKEIKEFLKERKEPSKWTPETKAKEKVFREYAKKVFPELYPD*
Ga0116200_100013912	F011723	GAG	VIVKMVIYNKGLSRDNSTNEGKKIFTLTSKPEEKYKVRRIVITDVLSNPLIMEIWIERDRIGEAIPLEVISDATPERIIDVDAEIPEGYEFSVVIKPQTSGNQGSVRGWVEYEIVR*
Ga0116200_100013913	F009582	GAG	VRESERDMVERRGRRPFIGGTGREVKEAKVDVVLQRVEEKIGKELNVVPSHVYRYGVNNIFQRTFAYLLGWKSDGEPVKLQASYGGLLKVAVSGAGFEEVDVLEGTATATWSATLEFNFVPNRIRFESLDYPYVASLSTDGVKWSEAVYVDEDTPRDFDICAKYIKVMRYGGSDAHYWIIGMR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116200_10001391

Overview

Ecosystem & Geography

Associated Families

Sequences