NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116200_10004823

Scaffold Ga0116200_10004823


Overview

Basic Information
Taxon OID3300010332 Open in IMG/M
Scaffold IDGa0116200_10004823 Open in IMG/M
Source Dataset NameMarine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6028
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016235Metagenome248Y
F024940Metagenome203Y
F024941Metagenome203N

Sequences

Protein IDFamilyRBSSequence
Ga0116200_100048232F024941AGGAGGMAYNFWGRLGITKGEEFRKLLEKAWNLGWSQREFYREVRARGLGYRESLMREDWHRFGYVESARTYEGKLTQHIFFDEVVKKLHDKEGWSWKEIKEFLNERKDPRRWTPETKVKEKIYKSYLREALPEKADT*
Ga0116200_100048233F016235AGGAGGMSEEKIPSSPPLFRHKKGRHRHGYQRCVEFVGIDKNDDYFGEGFPLCAVIKFKRSIYRYTPRTYELARLLATLKILYGEEYMEELNALAEVEYVRMRRRAEWLTIFGEDSE*
Ga0116200_100048235F024940AGGAGGMEREIIHKKIRSIKELREFITDYLIEHSEMRAKAMISANINAVFYEQGWMDALRTLRDLLSKEGLLMYRYVESEEQERAEDKNRDTI*
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