NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134080_10174389

Scaffold Ga0134080_10174389


Overview

Basic Information
Taxon OID3300010333 Open in IMG/M
Scaffold IDGa0134080_10174389 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)921
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028633Metagenome / Metatranscriptome191Y
F072683Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0134080_101743891F028633GAGMHAEFDVNTPRGQETINHLAPNGTVELAIRSMPFPGHAEIYSKKDIEKEKELADIDFYSGKTKDGLDIVLIPKTYSTSPGINIHAVTLPAGMSRLSYAEGHATKAHSSGDKIIAKYKQSIPTHFTYSPAILG
Ga0134080_101743892F072683N/ADRVSDKDKADAASPLLALKRIMYKDNDDGMNWGRDSISVTPILNETHHIDQTIYNRLQWLAALMQDSEPGSDEKIKDYFVNVVHISGENYDKLKASLIKQAASLKNRVESKDIQLDLDFEGTMKKLYAKEVEAAQAAKSTATATTSATSVEGTPTPAP*
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