NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134080_10421826

Scaffold Ga0134080_10421826


Overview

Basic Information
Taxon OID3300010333 Open in IMG/M
Scaffold IDGa0134080_10421826 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)621
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002922Metagenome / Metatranscriptome520Y
F034870Metagenome173N

Sequences

Protein IDFamilyRBSSequence
Ga0134080_104218261F034870N/ATDHIENTVKHLSDGVVDLSTEPFGSEDYARKMRVLKMPGAFTDMKVYAYRVGAAGIEMAALHRVR*
Ga0134080_104218262F002922AGGMLTDVAVLQFDGVFGLLENAGFLWALLIGTWGALSYSFLRRHRNGPKVGPTQVSGTTSFGLTKPRMSEEEIFRILTTTEVNIQILRICETPRSAREIARGLGEVYPGHKEKGFPPDKLGEHLANLERLGAVKFNGEKWAA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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