NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136644_10001541

Scaffold Ga0136644_10001541


Overview

Basic Information
Taxon OID3300010334 Open in IMG/M
Scaffold IDGa0136644_10001541 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18230
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (73.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003112Metagenome / Metatranscriptome506N
F039992Metagenome / Metatranscriptome162N
F091592Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0136644_100015411F003112N/ATNFSLRFLMTQKEYECFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEDGRDRDEIVDAVVHLAVALKYLEGRGRES*
Ga0136644_100015412F039992GGAGGVSLDEVYDLKDRVASVSERLARMEERQITLISMLERSLSNFGDLSNRVNAIEGLKTKMLLVAGGLGAIISIAWDFVKSKLINGG*
Ga0136644_1000154125F091592GGAMISAQFTRGDEDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKNRIGKLSDCNCYRDAKEVRSLVRDVKNGTVLFWCKVAGVRIDQATLNRVIKRGIGNVN*
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