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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010334 Open in IMG/M |
| Scaffold ID | Ga0136644_10086121 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1969 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030667 | Metagenome / Metatranscriptome | 184 | Y |
| F055682 | Metagenome / Metatranscriptome | 138 | Y |
| F102506 | Metagenome / Metatranscriptome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0136644_100861211 | F055682 | GGAG | MYDINQLSALKKHWLLRNSNIPRRFLGLEPQDLVDRAGSFPNEVTTWIDDCVNGQVIKQIGHIGVNGVGLLFDGGPGIGKTTHAVVAAMEFVRNLPDNDAEAAKVLGMSASDFGLGARPVYYMTYPEFLSRKKATFDSDFEDKKQAVYEIDGFHGRSKFDWLNVRILVIDDLGKEYGSKYDDTSFDEI |
| Ga0136644_100861214 | F102506 | AGG | MQMAKKVVKTFTANLNKNLEKGGAWMAIISITTDGMDGTDVLNTSAWSNASAGKRWVKSQVQALTPRKSVKMIAGEGKDIKGKLTSFVGVVTFKS* |
| Ga0136644_100861215 | F030667 | GGA | MDTYEVVYKNYRTENYRTSHDYKSDSQSTIKPLVPNRQISNKLKDIETKGFMREIRVPMRKWEDDGDDLAGFGLVEPKDAPQPKIRKSDPKTRGRRPEHEWTPMDVAAEFSFRVGRKYPLLPGTVSVKQLSGALAKFRKQYDTNALIELELLRLFMADERNFKDIGNEAPLLYKMYLSSFGKKMNQARENLGLNKINAPVDTAVKMGTLQASDGRTFQNSLSGRAQLARYEKRLKENANG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |