NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136644_10219994

Scaffold Ga0136644_10219994


Overview

Basic Information
Taxon OID3300010334 Open in IMG/M
Scaffold IDGa0136644_10219994 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1126
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008489Metagenome / Metatranscriptome332Y
F021287Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0136644_102199941F021287GGAMPNLTLITLTAPSLPANYCPASYQKLANDIIGGTQATFNSTIGNSFFNFGPTYPAINNRIYPWLDENGQWWIYDQGFWLRKNPVTAAYERRIYVGTTTDLLSYDGGDGTATATSTTGPMWEVDTEFEARFPVGVGAFVASGAVAVMGKATSTSIAGEDQHTLTIPEMPKHTHSMTWDSNDTSGGDQLNT
Ga0136644_102199942F008489N/ARGLDGTIQIWEISKTEKFDNNLSDGKKEIQWLVQTRAYNFELPFGLKRLDSGDIFIDSLDGDVSFNIEYRPDQYPGWIEWADWTECAATLQCQPVCPLSNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTITGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLEGCDVNPFLYTSE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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