NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134063_10001823

Scaffold Ga0134063_10001823


Overview

Basic Information
Taxon OID3300010335 Open in IMG/M
Scaffold IDGa0134063_10001823 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7583
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000986Metagenome / Metatranscriptome813Y

Sequences

Protein IDFamilyRBSSequence
Ga0134063_100018238F000986GGAGGMLLAKAALTVGGTFVLAGAYTMREGVIRIDVDEYRAGGSHVHLWVPAAAVPMVLHFVPTEHLRHGSEQARQAMPILRAIVKELKKYPDTEFVEVDDHDEHVRIRTQGARLQIDVDAPDQKVHVLCPLSTIEDVTIQLEEHGPAA*
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Institute for Fundamental Biomedical Research
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