NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134063_10072048

Scaffold Ga0134063_10072048


Overview

Basic Information
Taxon OID3300010335 Open in IMG/M
Scaffold IDGa0134063_10072048 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1538
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales → Sulfolobaceae → Sulfurisphaera → Sulfurisphaera tokodaii → Sulfurisphaera tokodaii str. 7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074706Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0134063_100720482F074706N/ALEQVLVLGGFVAMVLAVVILVTADPSFDVVFSILVIPGGVFTALLFWRPRPWIYLIAGVADCLLGIIALPIGLLGALGNPLVGPVYGSVVLATLSILLALPAGIIGYLRGRKILRHRTLAEGIYSLQGFAAIALVAVSIGAMAAGALAYQNLLAPAPMTGPFYDIPASANVSMLVENSRFVPSAFNVTAFNTTRITVLNEDDAPHTFTYVNNGTTYSHDLPGGSTTRFFVLFLAPGTVPFWSIPDRSGGMVGNITVNSG*
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