NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134063_10101289

Scaffold Ga0134063_10101289


Overview

Basic Information
Taxon OID3300010335 Open in IMG/M
Scaffold IDGa0134063_10101289 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1307
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021825Metagenome / Metatranscriptome217Y
F050264Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0134063_101012891F050264GAGGVAKKGFSRNFRYPSAELRDQVRAAVKERGFRSEQAFLIAACEHEIRQGANTEATEQFEARVAATLTNLAKQVQGLQTLAHAQ
Ga0134063_101012892F021825N/AMKKDYQRCLDKLAATAPETKSALIRSLLPGIEAALNSGKRLKAIWEALREEGLQMSYHSFHKTVSRSRKVKKPTATSILGKQPNPSETRGLRETEVEAVEERDPLANLKLLEENRPGFHWRSAKSLNALVHGTEDSNDKNKW*
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Institute for Fundamental Biomedical Research
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