NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134063_10175975

Scaffold Ga0134063_10175975


Overview

Basic Information
Taxon OID3300010335 Open in IMG/M
Scaffold IDGa0134063_10175975 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1000
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009285Metagenome / Metatranscriptome320Y
F062061Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0134063_101759751F062061N/AGEIGVILTPDAACLSIETSPGWMEALIQVVKQHEVLIGDHSHDLVYDLRDAEDEAQFRDLYPQGEYERARSGPRPLVDAIAQSPFAAASIERGENWFLVTEVEKKAQGTPIYCLSSGARGKDADMWGMGPLKDLLNTLALYGITEGDGWSPVHAERKGWLSLIQQQEDAMAAQTAGAATTLGFSPERRTAGQRDPAGKG*
Ga0134063_101759752F009285GGAGGMREPSYFTHEEYALTKVALAREEVPAEAFALLSAWIEGGRLLVDEREDVGGITFCRMDAKVMAPLPHIVASFFARRPYKRKAGHYPRWNGFYMLLYRDVEEGWKLVRIRRDSPDTEFVP
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