NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134071_10001055

Scaffold Ga0134071_10001055


Overview

Basic Information
Taxon OID3300010336 Open in IMG/M
Scaffold IDGa0134071_10001055 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9727
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000415Metagenome / Metatranscriptome1168Y
F001573Metagenome / Metatranscriptome669Y
F031431Metagenome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0134071_100010551F000415GGAGVNNQFDPELSNALLGFNEEAVLYCQGISDMVAQEYARDYARMLANQAKGMEFVPTRIPHGLFEPSRNLIKSTLDRMSDKYFTTKSNAQLLKDPRM*
Ga0134071_1000105513F001573N/AMMGRTFLGLLLPVLLFGVPLSAASGNAEPAAVLTSAISRLSHEASNNNETPVVFVYLIRKEFGTGEEELKWALDQKLSWGEITALSYIQATTGRSFVEMSRDHAPRDFWSYVENAGMNSTKMARSLDGFLKRVERERNSRIFDSLRASRRVHALPDLGNGFGLFQEALDFRRIDSPRASKVHEMPGELAKGTK*
Ga0134071_100010557F031431AGAAGGMQEWWRRMGAMWLGPLLFVAVSIFLWKYVGTVFMPELLARSVFLAVPGLASIELYVTINAALLYFSGYFAVAVFWPSLKPYLRNPFAAGFTLWLVNILVVLPILGRGILGYRLPQGWIAVSFPLLVSHWIFARGLQFQDRRL*
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