Basic Information | |
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Taxon OID | 3300010336 Open in IMG/M |
Scaffold ID | Ga0134071_10036081 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2186 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Angelo Coastal Reserve, California | |||||||
Coordinates | Lat. (o) | 39.7181 | Long. (o) | -123.6527 | Alt. (m) | Depth (m) | .4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004205 | Metagenome / Metatranscriptome | 448 | Y |
F006201 | Metagenome / Metatranscriptome | 379 | Y |
F052533 | Metagenome / Metatranscriptome | 142 | N |
Protein ID | Family | RBS | Sequence |
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Ga0134071_100360813 | F052533 | GGAGG | MSEVKTRAEAHEWILTHVRQRPGCQDFSQEFRLLGKGPKWECIPTNCYDWDRASLEAFDHVVGEARRRFELEG* |
Ga0134071_100360814 | F004205 | GGAGG | MEARVTSQSQPFRLMERMEEARVFHGQELRADLPNVRVTALAGSREGQALFCNLGPIRVREIVHRGDEGPLPTNVTIEGLEVSISGTYDILNALVSANGDLRLVVDDKARVVPAARLVDAALGYRVAMGG* |
Ga0134071_100360815 | F006201 | AGGAGG | MHPEQKTLLTSALEALGPERVTRGLEATGHTWNDCFLAIALYGAPAALARQLQKRWRREHFVGTLLGVRMQVVNEVVRAWDHEEDTFRALAAEWLELNRAAVPTGPVVGAQCPRAVVARVLLS* |
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