NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134062_10012676

Scaffold Ga0134062_10012676


Overview

Basic Information
Taxon OID3300010337 Open in IMG/M
Scaffold IDGa0134062_10012676 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3126
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002958Metagenome / Metatranscriptome517N
F003985Metagenome458Y

Sequences

Protein IDFamilyRBSSequence
Ga0134062_100126761F002958AGGAGGVAQVPPYQALKEAPTEIRQAATVALVCSSVSRAIGILTSTIIIATLPTWFPGLLAYQPIPILLVVLTVGCAIVGGKGSRIRERIASRDYEKARSASLSAAILGFIIAGVVPGILYFYLYMRVGNVMVKRRPDDPKTIYLLPHPSEGVFLGRYIGWAVAYLLILFIGYTQLPTG
Ga0134062_100126764F003985N/AFYAYPSFIISYWPWPVKELAVRFLGAIFLAIAFGCWSAVHAEKWQRAKILVLVGGTFFGITGIVSLVRGITVSSDASTWVWTGYFLIAGAGCLLLVQRYGWHRRQAETPTSTMPRDARLFFGIQTGAVGIFGIMMLLVPGLAQQEFWPWKVYVSTLQTFAALFLATCLATGWATQQKDPERIKVLLPLDAVFPSLALVAVAISWSVIAVESPSPLVTGVWVGLYSFVAAGSTILYFVLTRRSR*
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