Basic Information | |
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Taxon OID | 3300010339 Open in IMG/M |
Scaffold ID | Ga0074046_10000001 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 256610 |
Total Scaffold Genes | 245 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 159 (64.90%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000188 | Metagenome / Metatranscriptome | 1692 | Y |
F000739 | Metagenome / Metatranscriptome | 913 | Y |
F006229 | Metagenome / Metatranscriptome | 378 | Y |
F015120 | Metagenome / Metatranscriptome | 257 | Y |
F017859 | Metagenome / Metatranscriptome | 238 | Y |
F024591 | Metagenome | 205 | Y |
F044182 | Metagenome / Metatranscriptome | 155 | Y |
F059669 | Metagenome | 133 | Y |
F099608 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0074046_1000000115 | F099608 | AGGAGG | MKKMLLALGVLAMGASFSPAGQKPMMGTIISESSVDCGTKKQGKKESTELLCQQYTVRTDTSEYQIRQEKPGEKAIIPANTPIEFTLDKDKMKFKANGKKYEFLVVGNSAIGAGTK* |
Ga0074046_10000001202 | F024591 | N/A | MSRRSRFLLVAMSAAFGIAALGLVLGMCYILYLVAFHHGQLENVLGDSIPYNKTLGGLGILGMVLFFAFLFSAIADKKQDKPR* |
Ga0074046_10000001214 | F017859 | GGA | MDTSAAELALQELQERIEASGLEATYAGLVCDLCVEQVSLEKAFGEVHQKAIEHMVGLLDAKILEDELALQACLDKIAQESERLAWSALERGTEALREGIAILEGTAFMPDGGYVN* |
Ga0074046_1000000124 | F044182 | AGGAG | MPQTGSQVLFLGELPFWLKISQSVVEAPAASFQIHRSPSLRDALRRLDSEKWHAVLLDFSHPSAQELLAARKLHDGLGSVPVVALLPIADVQYENAAVLAGAASSLLLDEVSAASLHQAIANAINTTAVRKNSRKDTSMQFPLGQPGVDSLPLAKLDAISHAINNLLCVINANADILTDQLDASHNAIRSVSQIKKATKSAADLMRLLKTP* |
Ga0074046_1000000171 | F059669 | GGAG | MNTCRTQPPWEFLLTASRNTLQSYELSRLGHASNLRKEIASLLDQWLDENANAMVARWLIEQRERTVRASDPEPAPEPSTPEATAPSNGHSVSDNFLADRLVRPQVSRRRD* |
Ga0074046_1000000174 | F000188 | GGAGG | MSVKPEMAFDVCWEVYRGAREVMESKRGIAALNMEMETKYEWRPDVRPKMKDWVADFALAGQAALAGPEWASRMVLFRLYYLGLAPYERARHFLGLSERGWVNWSEEIRRRCGAEILRRGMFPPRKYFGGE* |
Ga0074046_1000000183 | F015120 | GAG | MFEILKRAFQTRYVGMLEGEVLRLRMENRALMNSLLGTAGFPPVEFVEAVKRVELPRMRRRSWQQIQRKNETEAMRETRDEFVEAVR* |
Ga0074046_1000000188 | F000739 | GAGG | MVAAGISGAAGGVMTGLAAVGIDPGHFNLQAGMGATVRIGGAAALINAVIGVAAYLQKSPLPGE* |
Ga0074046_1000000192 | F006229 | N/A | MVGGPEASVKRKLSFRTPQEDFRLKIERVRMNKQSDVVSLVNISAQKWPPRNRTYFGSLTIASPEAGAVYAVTPVRGCSSVMDLGDRRTMEIRLTAQEIAEDLVREINGDSGEGSYHGVFVAAGLEPTEEELAAARKKLEAFQRRLVEAADLEWERSHNLMFITDLERRAARELGLEKPWLYDPKPMADCPACGEKIKPGVAVCRTCGAILDREKAAKFGLAEREEGRGVETPTRVEKVLERGKRK* |
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