NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074046_10000003

Scaffold Ga0074046_10000003


Overview

Basic Information
Taxon OID3300010339 Open in IMG/M
Scaffold IDGa0074046_10000003 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)242991
Total Scaffold Genes209 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)117 (55.98%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004980Metagenome / Metatranscriptome416Y
F006434Metagenome / Metatranscriptome373Y
F063977Metagenome / Metatranscriptome129Y
F067033Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0074046_10000003138F067033GGAGMIGGSHLLLATPSGPVDASLGRFGLRGYGAVSVAAGQQIEATGVMKTIKDKQVLLVRIVKAGGEVYTIRNQHGVLLSPRARERAAQKASQKGESL*
Ga0074046_1000000315F006434AGAAGMRRLAFSAVVVALALALNLVCAWAAAKEETVEELKARVESARPEDRADLCMRIAQHQLQNADQLYIDGKVDQARAAVDDIVSYSEKARDAARQSRKRLKNVEINVRKMAEKLRDIKRTLAFDDQPPVEAAIRRLEDVRTTLLKEMFAKDVKEEKK*
Ga0074046_10000003166F004980N/AMKLVFGFAVLAFAGLVCFKLIPPFFANYELEDAIKTEATQSTYSTRSEEDIRQSVIKVARNYDIALTPKQVHVQRVGSLGTGTLSIDAEYSVPVDLPGYSTILEFHPSTQNKGVY*
Ga0074046_10000003209F063977N/AMSTDAIRWDEKAGLRTGCGVRSQVIDVLKAQIKRRPAMKKVS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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