Basic Information | |
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Taxon OID | 3300010339 Open in IMG/M |
Scaffold ID | Ga0074046_10000004 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 209609 |
Total Scaffold Genes | 194 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 114 (58.76%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000780 | Metagenome / Metatranscriptome | 895 | Y |
F000833 | Metagenome / Metatranscriptome | 871 | Y |
F002585 | Metagenome / Metatranscriptome | 546 | Y |
F003010 | Metagenome / Metatranscriptome | 513 | Y |
F018974 | Metagenome / Metatranscriptome | 232 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0074046_1000000417 | F003010 | GGAG | MAKAGKKKSFLESIPMLVLVGLLAGALGGLGIGLIQLRALNSAASASAAGGVPGK* |
Ga0074046_10000004176 | F002585 | N/A | MLPAAPSYASKKKQLPAVRWTAGAAGCTFESTDDGHYRWTMAGQDLTIRLVLDSQELAKSRHRFYRLLGMYISATYTGSGKFEFPADLRLDFVRHHDVLEGYEDPTELSNRIQNDVDTKIFQTERQIKKDPKSADEKTALLREYQKVAAEFIEFVSTQGLDPNTVILSPGNPEAHGWAFFATSNKWIGPWKDREDFILNVWMKDKVWQFPFSLPPAEGDLILRKPAD* |
Ga0074046_10000004188 | F000833 | N/A | LLAIVFPAQMMLAGETAAAMLYTNGSAWVNGTEAPKSIAMFAGDLLQTRPDSTASIQSSGSNVMVLADSLVKFEGPAVELEHGSVRVTTSRGLAAVAGDVTIRPAGDAWTEFQVTDNNGQVQIAANKGDVTVQDDKGTTTVTQGQQTTRDDTNTNDNEKKKKKRRKAAGAATAATGGIMSSPAVVYGGLAALGGAAIWIWTREPSPVSPACPHAICE* |
Ga0074046_10000004194 | F018974 | AGGAG | MADRPSSEIRSSPRDWGLTLKTFLTAVMSILSVLVVLLGVVWRDVLWLWIGFGCCLVSGVFIQIFINRIKNDVASGRR* |
Ga0074046_1000000455 | F000780 | N/A | MDRQPEKAKAEAESNTGAKGLFSSGHLMCHTPLWGVAGFLGCAYFTWVSFAHVTRHEYEWPHDLWTAATYIVWIILLLGLSLDTRCLRERLFFGLLVVNFVAGCGITLWHSIPSADVRSARIGTGALWALAAVVSLTTLGGAAEIRGEG* |
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