Basic Information | |
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Taxon OID | 3300010339 Open in IMG/M |
Scaffold ID | Ga0074046_10000493 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36196 |
Total Scaffold Genes | 53 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (69.81%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000272 | Metagenome / Metatranscriptome | 1408 | Y |
F003322 | Metagenome / Metatranscriptome | 494 | Y |
F004586 | Metagenome / Metatranscriptome | 432 | Y |
F004589 | Metagenome / Metatranscriptome | 432 | Y |
F010024 | Metagenome / Metatranscriptome | 309 | Y |
F069206 | Metagenome / Metatranscriptome | 124 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0074046_1000049322 | F004589 | GAGG | MKRQYLHLSAYACDQCAGPVVAGVIAVRENEISKETDVREVGAICLSCGYRQSKATEPGLPHSFAPRQWESVNVLTARRGPRELH* |
Ga0074046_100004933 | F004586 | AGGAG | MMTTMEQTKCAHVPCRCVAQPGDKYCGPACKEAGSEEIEIACQCDHGICPLTV* |
Ga0074046_1000049337 | F010024 | GGAGG | MRDKSESSFVVVRFNERTYQSGGVVAVIKGTTAAERTLNDFDWRLSEENRRAGWRYFLEKTDLRSGTDPEQATKLRQARLDLQES* |
Ga0074046_1000049338 | F003322 | GGAG | MDCQELDHLEGDFIQARAESRDLDSLGWTDREFSSLLAILDHKREGHQGERCPGD* |
Ga0074046_100004934 | F000272 | GGAGG | MSQTVVERTAEHIGESARRASRATSAIADAIEDSVGVVRHAAKQGGDAAEEILNDTTQRLQRHPLLTVATTFAVGVTVGTLIGWMLKRR* |
Ga0074046_1000049341 | F069206 | N/A | MEFFQLHHPPDVTVLCDRKACEQVADYLEVDDHGHEYRLCAMHTDSKTHASRLPTRRPSPDLPFRSRPAA* |
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