Basic Information | |
---|---|
Taxon OID | 3300010339 Open in IMG/M |
Scaffold ID | Ga0074046_10020100 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 4700 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000594 | Metagenome / Metatranscriptome | 1000 | Y |
F009971 | Metagenome / Metatranscriptome | 310 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0074046_100201003 | F009971 | AGGTGG | MRIFALRCLLLAVPMAGALAQTPALQMNVVYVCTDGQSFKVFSCDSTTGACDYQNYKKGQAYQRGEALRVQLAALLPAKCHAQTPAEARDDPHRGEIPPAPSPFKARASAGNSASGSAVALNSQTGPGAGGLKVGDTVRVLSDGWQEAKIIQVHGRSYVVHLPNGIDVSKLWPMEVRRLGKLTAEDHAVGQYDIHDRVQVLVNGKWMEGEIRGQNLNMYDIKVSGVDTGFGSDIVNTTPENIRMSSTPAPPAPTQRAAGQPPKPGLTSCAGKYEGRWEHVSGMGGMKVVFRSGKATITEGLGDEMPFDCFTGNGKVVFYKAGSFTPFSYDFDINNDGTLQTPLGAIKKMGN* |
Ga0074046_100201004 | F000594 | N/A | MKSLVRLLRRALLISYFCATLHAQEISIQALVTPSSVITKDGRPVNFALHGFIEFRSLSELFPYIDSQTHRWPGNPAFDDAKRQQLARELLRRGIESRVVSMTDERPLETLITHTEDELRHALAQVTEPTPVGYAEAFVAVQQKWKHAINCWSAAPSIPARVLSNWYPIAEGIPLYGATYDSTEHFWQAIKYHSDTTVADLNALLSTFENQNWTPWLARLDANPSLYLPNAYAIEFLRSNLTRDRLRWFRDQLTTHNLQSTEHARAAQQRTAAPFRFTAFEEKVIWGDLADIFHLVCTLSLPEDPLRATLDRSHFDGI |
⦗Top⦘ |