Scaffold Ga0074045_10001339

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074045_10001339

Scaffold Ga0074045_10001339

Overview

Basic Information
Taxon OID	3300010341 Open in IMG/M
Scaffold ID	Ga0074045_10001339 Open in IMG/M
Source Dataset Name	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	23875
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (80.77%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001463	Metagenome / Metatranscriptome	690	Y
F016424	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074045_1000133918	F016424	GAGG	VAKQGSKLPRKSVRDEKSEFGKDRRRRHHHYLVTVNYADGETFGRVYTDKDKATRFAERQRRSPVVKSARVSQVS*
Ga0074045_1000133919	F001463	N/A	MLEQAFLWRLFSGAVVFMKHFAGFYVLMVVGHNMLLRRMKDKQMTNIHKLPPILEDLRSHTPEQLAELRLMLSAGIAGRPDVRRPGFFELDGNDSVYYIFRYPTGHKVLLVAAWERQSDPVAEMVACSCPAA*

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