NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074045_10002538

Scaffold Ga0074045_10002538


Overview

Basic Information
Taxon OID3300010341 Open in IMG/M
Scaffold IDGa0074045_10002538 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16894
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F000781Metagenome / Metatranscriptome895Y
F006229Metagenome / Metatranscriptome378Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0074045_1000253810F000781GGAGMLTVSQLAPLKDRDPYLYETLTKIVSAVNATSQNAGVDPATPSPAPAPIASLQVQAANGWFDLSITDPASSRPGLFYFAESDVTPAFSAPRVHFLGAARNLYLQLGNQTLYWRAFSQYIGSQPSAPVTFGAPPIAVAGGGASGPAPLPSSGSGTLPNGLLRGGNGFGTPTGARIVKQTIL
Ga0074045_1000253812F006229GAGGMNTQNDVVALVNISTQKWPPRHRTYFGSLEIRSPEPGEAFAITPIHACKGIMDLGDKRTMEFPITAREIADDLVRELNGDSGEGSFHGVFAAAGPVPTEAELAEAHRKLDAFHRRLVEAADLEWERSHNPMFITDLERRAARELSLDKPWLYDPKPQAECPACGEKIKAGVAVCRSCRAILNRAKAAEFGLVPKESEITLDFGKLREKGSGK*
Ga0074045_1000253816F000739GAGMSGRISRLRIWLKGLVAAGISGAAGGVMTGLAAVGIDPGHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPDE*
Ga0074045_1000253817F000512GAGMIRVLRETHDTPEEVARRLKAAGGRNRFGEANYRVIWGWNRLAWIGGKFEDRDAHGDLLREVVELRLEPKYPQVNRWHVERWVPPEVYGTPRDWYAKTVESANGVSVAALGPFPERGEYEHCFTLQGPKGEFVQLTPTIVEHVMRAIEWARRFPKAKQRALLYEREAREEREYEEWAYMLMDDAVPALHGQPFVTVA*
Ga0074045_100025386F009917AGGMFSISSAVLLAVVSIGAQFVVFLRWIHRRMRDDEINRVFLRDLALRHLPCIYRALYRMAERQGIELDEMPIVNFVDLQNCGRRH*
Ga0074045_100025389F007488GGAGVRNPSATYEFSIKENYGATLRIREYDERDLEALRAIHAAQGFPYEFPDLRNPLFLTKMVLAGDEPDAPEGKGIAGAALLRLTAEAYLLLDPKRGTPKERWQWLLGLHEATRLQAWQRGLEDVHAWLPPEIAAKFGRRLTRLGWVRDDQWTPYCNRLK*
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