NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074045_10027430

Scaffold Ga0074045_10027430


Overview

Basic Information
Taxon OID3300010341 Open in IMG/M
Scaffold IDGa0074045_10027430 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4350
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium CG_4_9_14_3_um_filter_65_15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037313Metagenome / Metatranscriptome168Y
F042445Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0074045_100274301F037313N/AMLAGCAQQGGGLLQPTPKQIISGKNTIVPSAAALSMEATNFCNAQAQVDYAGLVLYCEGKTPALPLSISTTYQTEANQFSCQVYGYTNSSNQLIVPQTVTLGNCPTGV
Ga0074045_100274302F042445N/AVETQLNKALPAKPLPGATIAICQILALAAALTSGCAQVHEKMFTVDCAIGREPIAGELAPGTAMAIDVSTSPIPLISAPHRVIARCDSAGAVTMYLETPVDTGLSELSTPLSTAASHVTYAP*
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