NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074045_10155928

Scaffold Ga0074045_10155928


Overview

Basic Information
Taxon OID3300010341 Open in IMG/M
Scaffold IDGa0074045_10155928 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1549
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102308Metagenome / Metatranscriptome101N
F105715Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0074045_101559281F102308AGGAGMLCIRSPKKRKAEAKRVSTFEIRARFRGEHETLSRLAFVITGDIEAAERSVSKAHELVTNGVHPLPIRQPLKEWVKAVTITAAITNSLYEIARCESRYVNQDCMHSEQLLNGCDSKLKEFRNFVLQTDPEIIIAELDPLARAVAIMRTTAGASILDCILRLKLSLD
Ga0074045_101559282F105715GAGGMLRVEFNQRNKGLLLKLEGRLVSAWAVQVRSLVSRRFVRNGLLVDMSEVTYVDSAGEQLLLWLRDLQAKFMAETCYTRDICERLHPTIKGDADRPVPSATEVLPSSTVAPLSRPGGL*
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