Scaffold Ga0116252_10040406

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116252_10040406

Scaffold Ga0116252_10040406

Overview

Basic Information
Taxon OID	3300010342 Open in IMG/M
Scaffold ID	Ga0116252_10040406 Open in IMG/M
Source Dataset Name	AD_JPNAca1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3786
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Japan
Coordinates	Lat. (^o)	37.43	Long. (^o)	138.83	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F079485	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116252_100404064	F079485	GAGG	MASTRQNADFANHLFPSDPLDTAIDWIKANLSPGDVFDEAQLAEHVRNNIEINDVYPERNILDFVQGTYNPGDVFTDRDLEGWADDHGYTKQ*

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