NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074044_10042253

Scaffold Ga0074044_10042253


Overview

Basic Information
Taxon OID3300010343 Open in IMG/M
Scaffold IDGa0074044_10042253 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3160
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092532Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0074044_100422535F092532GGAMAKNKKKSHRGTGRGQKLLSGTRDQLIKDLQRVHKVFPTAEPDRDFYRKHGKFADAAWKEHFPRFKDFAAAAVPEMTPDQAFKLAVRSLDRAIDLIQKWHEDAKYGEGWVKHQIDAVNARVHELDELFYMWRLVKTIDDEEEQGEPIPTVLPDPEFLEEKQ*

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