NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116253_10103787

Scaffold Ga0116253_10103787


Overview

Basic Information
Taxon OID3300010345 Open in IMG/M
Scaffold IDGa0116253_10103787 Open in IMG/M
Source Dataset NameAD_JPNAca2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2015
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin028(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)37.43Long. (o)138.83Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023320Metagenome / Metatranscriptome210N

Sequences

Protein IDFamilyRBSSequence
Ga0116253_101037873F023320N/AMKQYKALTFEVDLSGLGKEQWIQEELDYDTIAQKIIDTLIDVMREKDVEASSNLIQSLEPETKSGEIVIYADYYWKFIDKGVNGLRQSRDSEFSFKFVPASKKHALSIAKWLEFRGLATEVTTLADAYKVATATKIKGIRGRHFVEEFEKEIDKIEII*
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