NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116239_10015173

Scaffold Ga0116239_10015173


Overview

Basic Information
Taxon OID3300010346 Open in IMG/M
Scaffold IDGa0116239_10015173 Open in IMG/M
Source Dataset NameAD_USMOca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9792
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003987Metagenome / Metatranscriptome458Y
F004383Metagenome / Metatranscriptome440Y
F009968Metagenome / Metatranscriptome310Y

Sequences

Protein IDFamilyRBSSequence
Ga0116239_1001517313F004383AGGAGMSDVNILERAFMARIRADEYREALAALQQEFDERPDVIDLKRQIERCEEERRQCIEQAKAAGISKQGSFLLKIRTRKQRTVIPERFFARFGAETFVRCSTVAIGKAEALLGKAALDDCCEVEVKEIGVSVEYERPEGSE*
Ga0116239_1001517314F003987GGAGGMIPALPCGTYADSGVPAGAFYVAAFEDGDQTHHVGEYRIETLVRALRALQACGYDDVEVGSIERDGKTHLLLSGLDGEARFGDVQIGCIAVAPVEVE*
Ga0116239_1001517319F009968AGGAGGMSHPHSCIGCRSHYRERHWWIFEIDFCGLDGDVVGFECPIGCIDTRGCSAYERALAWPEGAIA*
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