NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116248_10497338

Scaffold Ga0116248_10497338


Overview

Basic Information
Taxon OID3300010351 Open in IMG/M
Scaffold IDGa0116248_10497338 Open in IMG/M
Source Dataset NameAD_USPNca
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)896
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.88Long. (o)-75.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053314Metagenome / Metatranscriptome141N
F067884Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0116248_104973381F067884N/ALNRYQVTAVSGDALGGWLDWFTALARQAQKFVLYDEDQVLILKVVADSVLVSDQAVEFDWGTVDRKPESRVGFARADFSETDWVH*
Ga0116248_104973382F053314GGAMVRSSVIVRDNVIVTVFENGRAINRFTAHNTWGTAGLNSIRDWFAGIGGTPVTHIAWADASGNEWARDLVTQRVYTTDKTLLIRQYLSSASTANGHTITTVRAYNAQSGGTMFAEAVFDAVGVAKTTNNQITVEWTHTFADGGS*
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