Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10000890 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10000890 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26332
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (17.39%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

26332

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (17.39%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001055	Metagenome / Metatranscriptome	791	Y
F001338	Metagenome / Metatranscriptome	719	Y
F001725	Metagenome / Metatranscriptome	645	Y
F001923	Metagenome / Metatranscriptome	617	Y
F002413	Metagenome / Metatranscriptome	561	Y
F006659	Metagenome / Metatranscriptome	367	Y
F014261	Metagenome	264	Y
F026860	Metagenome	196	Y
F071224	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000089013	F006659	N/A	MKKDSKPSPEYRIIADSSYILLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLADIEATIKAGEVTKAATEPTK*
Ga0129333_1000089019	F000957	AGGA	MSSFRHLDGMLALLSEIYHINERIMTGDICSAKTAIESKRMEKLLNHYHEALSEDGATKISLQAYAAAGGWVGITYSYEVDGFEIAGSQVPRRV*
Ga0129333_100008902	F026860	N/A	MRRFDPLALIKALRSEGDIPAPKGWFTVDQIREELRMAHTRNASSRALDLYRRGLLERQPHQFKARTGQCHMAYVYRPVPPYRTIAEAATRVFEHQEETVPKGWVRIVDVSVKVKLSDVSVRSRIARAGLKPRYFKTRRGIIGIHRNAYYLESAVMALFR*
Ga0129333_1000089022	F071224	N/A	MAEYAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRQWLDITGTTWVNINRRGPYKRQK*
Ga0129333_1000089024	F014261	N/A	MKSLVTLAAILIFGWLAVVTFCGPELYRAINGPEPVKAKAVVRRVR*
Ga0129333_1000089027	F001923	N/A	VSASPIDPETIPKELKDGVVASVLGGLAMTARLLLSTEPVSFGWVVRRVLAAAITAAMVGYGIQEHISSPGLRMAVVGAAGYAAPECLDYLMRYIKARGEKEVAAVTAKAAKPNGKAKAKPASKRKR*
Ga0129333_1000089038	F001725	N/A	MAAIDTGTTCIYGVAGTVTNLFVQSYSLSSSFNSEATVVDEAGLTKTARYDDRKTEITIEGIAKTSTMPVLGAALSFTVNTASAYPSGSASASFVGTITKIDDKGSNKGFTAVTITAVDYEGITPA*
Ga0129333_1000089039	F001055	AGG	MGTKSIRHIVEATLATYLSTQTGLTSVQFLTGDSAVTQTLPKAVVLCDSARAPGDLPEGLGNYACSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVSSTDASCYDVTMVSEDEGLDERSWATSFAFDVLVVLPPA*
Ga0129333_100008905	F002413	N/A	MPAPTLVLIAGYARTGKSTLASGILEWATRPAEHINFADALKEAANHYMDYLGLDGDFFKEDFKVDNRDFLVHAGKFARRLDRDVFARHFANWCPVMKHADQPSPETVVCSDWRYVNELRVCQDILWEKGWRVRTIYVATAGVGPANDEELDSIAEIRASHLFDQEYIFKPNARNQIMTEGRNLAKSWRL*
Ga0129333_100008907	F001338	N/A	MNPPNNDRPPLKSIEVSGTYKLKLIKPKFEKVKHNEDGTSSARLFFLDDQGNCLSKSYGSKYAKPLAMLVGKFAGKFTEEIRLDATPAEFLQYIEPACGKTCLIGVEAIPNGEWNGKPQFKYKLTFPKGSQKPVVSEPPPENPPF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10000890

Overview

Ecosystem & Geography

Associated Families

Sequences