Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10007065 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10007065 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10625
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (77.78%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10625

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (77.78%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F026558	Metagenome	197	Y
F040626	Metagenome	161	Y
F057213	Metagenome / Metatranscriptome	136	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_1000706510	F057213	GAG	MTENNIVGSDTAAPDVTQENNVTDGKVNPGAIRKSTTTSLLNALSQASGQQFESVEAALAYVARTSNSVGNVKPVEADTPEPRMGREDVSDNTDLREQFSKLQRDLQSKERALRQKELDSEILRTMGDKFDPDLVDYALQKVKSNIQFKRDGTYAIVNQKGQERYGLDGNPLTIAGLVNEVASGNPKLLKAGNGLSGSGLKPGQNNFAGAPLDQIPDYSKDPAAFNAWASKQGLGRSVGLRGTKVSATVSGQSRKLF*
Ga0129333_1000706511	F026558	AGG	MHTQELISKNPIYNSLYEQMLAYQYAYLGGYVFKTYVRKKRPSEDSNLWQDLVNNTVAQPISRYIVDTINDVLFEPGVKRDMKFCTPTGVYINPDNTEWSDLFLLDCDLQNRSLNSFMEGVGQLSSIFGHCWVFVDMPQQMEGNLGRPYVVSMSPLNVWDWEWEWFGGKPLVKYVKVLESEDKHNWYLKTYHLGTDTTPSYWVSYRVGKSVSQDDTEETGRGEYPPGMALPAFIVYGRRDPRSMDFGVSDIDSASDAQREHYKLECEAYTAIQFAHTLIRADKGVSIPVHAGAIVRASQGQIETIPVNTGDVDAVLKKQNDILEHIEALTGLGGLRNSKNQLASGIAIIEERKQLHRLAKSKARLMENAEEMIFTFAARFMNMRWAGEVIYNTDYEAYDTNYRMALIKEARQLVQNNPIIDSLIAKEIIGMLAPDESVPEYEQAYIDTITDTTVKDLMTKENEQVLSRDLGSMIPTAKDFGMNEPTYGDDTGYDTAMGDDSTGAGTPITFTGQSYYTQQAVATQLQGINTGR*
Ga0129333_100070653	F040626	N/A	MVSILQIDSLGKRYGLLPSEVISRGNTFDLYIMDCALTFEHHQHKKAMNNGKDPVPEYTQEQLLNIFNKGQGIV*
Ga0129333_100070655	F003807	GGA	MTNQILTTTEEKLRSLIADEAKLMPMLNNMEQTIRQMRAKQAFRLALLNQLLEDYYDKYSGN*
Ga0129333_100070658	F002260	AGGA	MSVPYQRISNANVSDIIFYDPAAERRASQMNVNWDDYFKVGSQEILYKLEFGWWPKYCDIVLGATYYTNLPNGALISSFNPNLLIKNDQTLIRLDTFMAVKIFYESIVSDVSNVNDVDKANYDHALRRFEYEWEKALQLMNFYDLDQNAPQGPTTKLEENWTSDVDYFNNDRRYF*
Ga0129333_100070659	F011761	AGGAG	MAYVLGGGNNEADGFTTAIANFALRAMHESTGLVDYTTVVAPNQGNQYLVPQFAPITYQDYLPNANAANGGFGSNTGGAVEQNPSLGQGSITASPAVAATAFDIFYAWTTSFELAATLGAELGESYGEKVDQRVCDAFLSFKATPSNTNYSPTPQDGFARPTQLGAIELAEAGSNVSVGAGGTAGFSAATVLDAIRLIKQNYKVARLPGTPIIVLDSNGDAGGSVAGQTGSSMNRLLAELTGGAVNNPTYGGGSALSALGNELLANGKLDNVYGCRVLFTTFLNTASRTFLGSGPFNVLVGAYFHETALITVIKEGLQIKMGEKPGGLQMWLTGVAYMGAGVADPRRGGAINIQQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10007065

Overview

Ecosystem & Geography

Associated Families

Sequences